Welcome to wsiprocess’s documentation!

Contents:

• wsiprocess package
  • Subpackages
    • wsiprocess.annotationparser package
      • Submodules
      • wsiprocess.annotationparser.ASAP_parser module
      • wsiprocess.annotationparser.GeoJson_parser module
      • wsiprocess.annotationparser.NDPView_parser module
      • wsiprocess.annotationparser.QuPath_parser module
      • wsiprocess.annotationparser.SlideRunner_parser module
      • wsiprocess.annotationparser.WSIDissector_parser module
      • wsiprocess.annotationparser.parser_utils module
      • Module contents
    • wsiprocess.converters package
      • Submodules
      • wsiprocess.converters.base_converter module
      • wsiprocess.converters.wsiprocess_to_coco module
      • wsiprocess.converters.wsiprocess_to_voc module
      • wsiprocess.converters.wsiprocess_to_yolo module
      • Module contents
    • wsiprocess.pytorch package
      • Submodules
      • wsiprocess.pytorch.utils module
      • wsiprocess.pytorch.wsidataloader module
      • wsiprocess.pytorch.wsidataset module
      • Module contents
  • Submodules
  • wsiprocess.annotation module
    • Annotation
      • Annotation.add_class()
      • Annotation.base_mask()
      • Annotation.base_masks()
      • Annotation.check_classes()
      • Annotation.check_memory_consumption()
      • Annotation.dot_to_bbox()
      • Annotation.exclude_coords()
      • Annotation.exclude_masks()
      • Annotation.export_mask()
      • Annotation.export_masks()
      • Annotation.export_thumb_mask()
      • Annotation.export_thumb_masks()
      • Annotation.fix_mask_size()
      • Annotation.foreground_mask()
      • Annotation.from_image()
      • Annotation.get_patch_mask()
      • Annotation.get_scale()
      • Annotation.include_masks()
      • Annotation.main_mask()
      • Annotation.main_masks()
      • Annotation.make_masks()
      • Annotation.merge_include_coords()
      • Annotation.read_annotation()
      • Annotation.resize_mask()
      • Annotation.resize_masks()
      • Annotation.set_scale()
  • wsiprocess.cli module
    • Args
      • Args.add_annotation_args()
      • Args.add_binarization_method()
      • Args.add_on_annotation()
      • Args.add_on_foreground()
      • Args.build_args()
      • Args.fillattr()
      • Args.fillattrs()
      • Args.set_base_parser()
      • Args.set_classification_args()
      • Args.set_common_args()
      • Args.set_detection_args()
      • Args.set_evaluation_args()
      • Args.set_method_args()
      • Args.set_segmentation_args()
      • Args.set_wsi_arg()
    • main()
    • process_annotation()
  • wsiprocess.converter module
    • Converter
      • Converter.to_coco()
      • Converter.to_voc()
      • Converter.to_yolo()
  • wsiprocess.error module
    • AnnotationLabelError
    • MissCombinationError
    • OnParamError
    • PatchSizeTooSmallError
    • SizeError
    • SlideLoadError
    • WsiProcessError
  • wsiprocess.patcher module
    • Patcher
      • Patcher.slide
      • Patcher.wsi_width
      • Patcher.wsi_height
      • Patcher.filepath
      • Patcher.filestem
      • Patcher.method
      • Patcher.annotation
      • Patcher.masks
      • Patcher.classes
      • Patcher.save_to
      • Patcher.p_width
      • Patcher.p_height
      • Patcher.p_area
      • Patcher.o_width
      • Patcher.o_height
      • Patcher.offset_x
      • Patcher.offset_y
      • Patcher.on_foreground
      • Patcher.on_annotation
      • Patcher.magnification
      • Patcher.p_scale
      • Patcher.ext
      • Patcher.start_sample
      • Patcher.finished_sample
      • Patcher.extract_patches
      • Patcher.no_patches
      • Patcher.verbose
      • Patcher.dryrun
      • Patcher.x_lefttop
      • Patcher.y_lefttop
      • Patcher.iterator
      • Patcher.last_x
      • Patcher.last_y
      • Patcher.result
      • Patcher.annotation_cover_patch()
      • Patcher.corner_on_patch()
      • Patcher.crop_patch()
      • Patcher.find_bbs()
      • Patcher.find_masks()
      • Patcher.get_iterator()
      • Patcher.get_mini_patch_parallel()
      • Patcher.get_patch()
      • Patcher.get_patch_parallel()
      • Patcher.get_random_sample()
      • Patcher.patch_on_annotation()
      • Patcher.patch_on_foreground()
      • Patcher.remove_dup_in_results()
      • Patcher.save_patch()
      • Patcher.save_patch_result()
      • Patcher.save_results()
      • Patcher.set_magnification()
      • Patcher.side_on_patch()
      • Patcher.to_bb()
  • wsiprocess.rule module
    • Rule
      • Rule.classes
      • Rule.assert_incl_excl()
      • Rule.load_rule()
  • wsiprocess.slide module
    • Slide
      • Slide.path
      • Slide.slide
      • Slide.wsi_width
      • Slide.wsi_height
      • Slide.crop()
      • Slide.export_thumbnail()
      • Slide.get_thumbnail()
      • Slide.load_slide()
      • Slide.set_properties()
      • Slide.magnification
  • wsiprocess.utils module
    • show_bounding_box()
    • show_mask_on_patch()
  • wsiprocess.verify module
    • Verify
      • Verify.save_to
      • Verify.filestem
      • Verify.method
      • Verify.start_sample
      • Verify.finished_sample
      • Verify.extract_patches
      • Verify.no_patches
      • Verify.magnification()
      • Verify.make_dir()
      • Verify.make_dirs()
      • Verify.on_params()
      • Verify.sizes()
  • Module contents

Indices and tables

• Index

• Module Index

• Search Page